Short version is the crank bearings are often found to have been damaged. I know a few folks who have been told that is bad advice and not needed only to have had bottom end failures within 1000 miles of having just the headgasket done. One of which ended up becoming very nasty and going to court, which they won i should add, but the costs were pretty big for that
As far as 2.0, they seem to be less suseptable to crank bearing damage when headgasket fails, how ever given the milage most of them are at now its pretty much a no brainer to refresh the bottom end while the heads are off